Hg_chrom3_TN10mRNA_6432
Organism: Heterodera glycines Gene Locus: chr3:10452724-10454029 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.194 | 0.354 | 0.76 | 0.131 | 3.359 | 0.682 | 0.905 | 1.141 | 0.591 | 0.976 | 1.037 | 1.118 | 0.634 | 0.439 | 1.785 | 0.652 | 0.686 | 0.749 | 2.34 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6098
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RKFARLAETSRKTRRSNK,RRQWERKFARLAETSRKTR
|
7-48
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.268
|
0.428
|
0.295
|
0.287
|
0.294
|
0.130
|
0.106
|
0.011
|
0.094
|
0.572
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001228
|
4.000
|
1.000
|
Hsc_gene_12254.t1
|
— | — | — |
KAI3411735.1 hypothetical protein GPALN_001802 [Globodera pallida]
|
WP_258543297
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
— |
IPR000642+21-101+|IPR037219+12-185_23-182+
|
— |
PF01434+21-101+Peptidase_family_M41
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
183-263
|
1.000
|
1-182
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
30344.490
|
4.512
|
-20.000
|
42.205
|
9.886
|
55.133
|
44.867
|
17.871
|
24.335
|
39.924
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
535.440
|
58.547
|
7.880
|
5.996
|
8.092
|
9.183
|
5.994
|
9.810
|
27.515
|
2282.351
|
1315.993
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.116
|
-3.424
|
— | — | — | — | — | — |
-4.683
|
— |
-7.555
|
— | — |
No JSON data available for plots.