Hg_chrom3_TN10mRNA_6435
Organism: Heterodera glycines Gene Locus: chr3:10466538-10467099 Feature type: polypeptideProtein Sequence
Length: 119
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.173 | 1.173 | 1.681 | 0.0 | 1.401 | 0.215 | 0.9 | 1.681 | 0.747 | 1.136 | 0.891 | 2.472 | 1.634 | 0.485 | 0.514 | 1.08 | 0.827 | 1.273 | 0.0 | 0.494 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6101
|
— | — |
1.778
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
3.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.878
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.805
|
0.166
|
0.035
|
0.639
|
0.051
|
0.156
|
0.064
|
0.035
|
0.063
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000121
|
12.000
|
2.000
|
Hsc_gene_14524.t3;Hsc_gene_25683.t1
|
— | — |
Q8L765.1 BTB/POZ and MATH domain-containing protein 1 [Arabidopsis thaliana]
|
KAI3408201.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.878|GO:0110165_0.815|GO:0005622_0.732|GO:0008150_0.634|GO:0043226_0.623|GO:0043229_0.611|GO:0005737_0.580|GO:0003674_0.507
|
IPR000210+13-116_22-103_22-118+|IPR011333+1-119_3-115+
|
SM00225+22-118+
|
PF00651+13-116+BTB/POZ_domain
|
— |
PTHR45774+4-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-119
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
12938.450
|
4.313
|
-9.000
|
29.412
|
10.924
|
47.899
|
52.101
|
11.765
|
17.647
|
55.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
11.119
|
4.311
|
16.403
|
16.039
|
29.320
|
13.902
|
21.901
|
3.600
|
0.000
|
9.091
|
5.195
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.696
|
1.762
|
— |
0.841
|
-1.064
|
— |
-2.055
|
2.751
|
— |
4.860
|
— | — | — |
No JSON data available for plots.