Hg_chrom3_TN10mRNA_6436
Organism: Heterodera glycines Gene Locus: chr3:10467793-10470716 Feature type: polypeptideProtein Sequence
Length: 264
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 0.793 | 0.826 | 1.306 | 1.641 | 0.68 | 0.812 | 1.894 | 0.842 | 1.536 | 0.976 | 2.005 | 0.737 | 0.728 | 0.85 | 0.703 | 0.435 | 1.377 | 0.583 | 1.003 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6102
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
PMFKRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.545
|
0.491
|
0.020
|
0.666
|
0.094
|
0.077
|
0.094
|
0.111
|
0.062
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001987
|
3.000
|
1.000
|
Hsc_gene_3937.t1
|
Hsc_gene_3937.t1
|
— |
Q5M9F5.1 Diphthine--ammonia ligase [Rattus norvegicus]
|
KAH7723697.1 ATP-binding domain-containing protein 4 [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.868|GO:0110165_0.868|GO:0005622_0.792|GO:0005737_0.776|GO:0008150_0.684|GO:0003674_0.645|GO:0003824_0.575|GO:0008152_0.552|GO:0044238_0.526
|
IPR002761+1-229_1-230_2-213+|IPR014729+1-158+|IPR030662+1-254_1-257+
|
— |
PF01902+1-229+Diphthamide_synthase
|
G3DSA:3.40.50.620:FF:000145+1-158+ATP-binding_domain_containing_protein|G3DSA:3.90.1490.10:FF:000001+159-258+Diphthine--ammonia_ligase
|
PTHR12196+1-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-264
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
29409.960
|
5.578
|
-5.000
|
28.788
|
10.606
|
42.424
|
57.576
|
14.394
|
14.394
|
47.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1080.059
|
885.472
|
668.149
|
1826.161
|
1884.919
|
1438.387
|
832.573
|
633.348
|
569.798
|
1234.533
|
949.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.636
|
0.907
|
1.559
|
— |
-0.375
|
-0.779
|
-1.288
|
0.537
|
— | — | — | — | — |
No JSON data available for plots.