SCN Proteipedia

Hg_chrom3_TN10mRNA_6437

Organism: Heterodera glycines Gene Locus: chr3:10471134-10474877 Feature type: polypeptide

Protein Sequence

Length: 527

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.5	0.927	0.656	1.243	0.506	2.384	0.565	3.321	0.464	0.949	0.259	1.228	1.054	0.876	1.355	1.654	1.089	0.748	0.584	0.112	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6103	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RHAKRRT,KRRTETLSHCVHCARPFKR	—	—	32-53	0.996	—	—	0.000	—	—	0.785	0.136	0.032	0.310	0.019	0.034	0.044	0.030	0.075	0.127

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000406	1.000	7.000	Hsc_gene_22663.t1;Hsc_gene_22663.t2;Hsc_gene_3936.t1;Hsc_gene_3936.t2;Hsc_gene_3942.t1;Hsc_gene_3942.t2;Hsc_gene_3942.t3	—	—	Q8CII0.1 Zinc finger and BTB domain-containing protein 8B [Mus musculus]	XP_018647565.1 odd-skipped-related [Schistosoma mansoni]	No	-0.560

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.868\|GO:0009987_0.830\|GO:0065007_0.819\|GO:0050789_0.816\|GO:0050794_0.813\|GO:0003674_0.808\|GO:0005488_0.802\|GO:0005575_0.784\|GO:0008152_0.782\|GO:0019222_0.782\|GO:0044238_0.782\|GO:0080090_0.782\|GO:0031323_0.776\|GO:0043170_0.776\|GO:0044237_0.776\|GO:0060255_0.776\|GO:0003676_0.771\|GO:0097159_0.771\|GO:0009058_0.767\|GO:0009059_0.767\|GO:0009889_0.767\|GO:0010556_0.767\|GO:0031326_0.767\|GO:0044249_0.767\|GO:0010467_0.766\|GO:0010468_0.766\|GO:0006139_0.765\|GO:0006351_0.765\|GO:0016070_0.765\|GO:0032774_0.765\|GO:0034654_0.765\|GO:0090304_0.765\|GO:0141187_0.765\|GO:0006355_0.760\|GO:0019219_0.760\|GO:0051252_0.760\|GO:2001141_0.760\|GO:0003677_0.754\|GO:0110165_0.739\|GO:0005622_0.709\|GO:0003690_0.686\|GO:0043565_0.686\|GO:1990837_0.686\|GO:0043226_0.663\|GO:0043229_0.655\|GO:0006357_0.574\|GO:0006366_0.574\|GO:0016020_0.562\|GO:0001067_0.554\|GO:0000976_0.550\|GO:0140110_0.528\|GO:0048518_0.523\|GO:0005634_0.518\|GO:0043227_0.518\|GO:0043231_0.518\|GO:0048522_0.518\|GO:0003700_0.517\|GO:0009893_0.503	IPR013087+3-23_128-150_128-155_130-150_156-178_156-183_158-178_186-208_186-213_188-208_214-239_216-239+\|IPR036236+137-195_186-236+	SM00355+3-23_128-150_156-178_186-208_214-239+	PF00096+130-150_156-178_186-208+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000322+153-180+GDNF-inducible_zinc_finger_protein_1\|G3DSA:3.30.160.60:FF:001818+184-211+GDNF-inducible_zinc_finger_protein_1_isoform_X1	PTHR24390+3-240+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	230-527	1.000	1-229	6ml7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.855	57232.700	8.405	26.500	21.632	11.575	53.131	46.869	14.991	6.641	56.546

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	greenyellow	406.525	189.699	391.370	251.244	187.716	176.902	371.020	180.641	425.298	803.850	641.614

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.815	0.268	-0.530	-0.452	—	1.078	—	1.182	—	—	—	—	—

No JSON data available for plots.

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