Hg_chrom3_TN10mRNA_6438
Organism: Heterodera glycines Gene Locus: chr3:10475108-10477452 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 1.19 | 1.142 | 1.123 | 1.357 | 0.656 | 0.581 | 0.93 | 1.24 | 1.383 | 1.163 | 1.505 | 1.744 | 0.447 | 0.997 | 1.03 | 0.762 | 0.775 | 1.252 | 0.684 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6104
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.684
|
0.136
|
0.006
|
0.510
|
0.155
|
0.082
|
0.067
|
0.044
|
0.157
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000828
|
5.000
|
1.000
|
Hsc_gene_22662.t1
|
Hsc_gene_22662.t1;Hsc_gene_3941.t1
|
— |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.780|GO:0110165_0.780|GO:0005622_0.722|GO:0008150_0.705|GO:0005737_0.626|GO:0009987_0.583|GO:0043226_0.524|GO:0043229_0.502
|
IPR000210+12-118_19-95_19-126+|IPR002083+284-415_286-395_288-411+|IPR008974+277-424+|IPR011333+1-153_2-118+|IPR011705+130-240_134-235+
|
SM00061+286-395+|SM00225+19-126+|SM00875+130-240+
|
PF00651+12-118+BTB/POZ_domain|PF07707+134-235+BTB_And_C-terminal_Kelch|PF22486+288-411+MATH_domain
|
— |
PTHR45774+7-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
49008.130
|
5.730
|
-4.000
|
28.837
|
12.093
|
48.372
|
51.628
|
14.419
|
14.419
|
46.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
971.377
|
557.704
|
761.707
|
760.055
|
632.909
|
556.183
|
572.890
|
742.063
|
1035.524
|
1754.315
|
1446.262
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.221
|
0.310
|
— |
-0.297
|
— | — |
0.309
|
— | — | — | — | — | — |
No JSON data available for plots.