Hg_chrom3_TN10mRNA_6439
Organism: Heterodera glycines Gene Locus: chr3:10479486-10481489 Feature type: polypeptideProtein Sequence
Length: 240
(Signal peptide: 1-14)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.308 | 1.357 | 1.212 | 0.575 | 0.833 | 0.641 | 0.942 | 2.292 | 1.296 | 1.802 | 0.758 | 1.961 | 1.042 | 0.561 | 0.85 | 0.536 | 0.751 | 0.821 | 0.321 | 0.613 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6105
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-14
|
0.972
|
1.000
|
0.000
|
0.000
|
0.256
|
0.282
|
0.003
|
0.340
|
0.653
|
0.240
|
0.213
|
0.043
|
0.458
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008176
|
1.000
|
1.000
|
Hsc_gene_13636.t1
|
Hsc_gene_13636.t1
|
— | — |
WP_078629820.1 MULTISPECIES: ankyrin repeat domain-containing protein [Streptomyces];MET7435985.1 ankyrin repeat domain-containing protein [Streptomyces flaveolus]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.791|GO:0003674_0.747|GO:0005575_0.644|GO:0110165_0.632|GO:0009987_0.591|GO:0008152_0.558|GO:0016020_0.548|GO:0044238_0.515|GO:0005488_0.502
|
IPR002110+66-92_66-95_68-94_105-172_108-137_108-140_141-170_141-173_142-157_174-203_174-206_182-227_190-204_207-236+|IPR036770+19-138_64-228_140-233+|IPR050889+64-136+
|
SM00248+66-95_108-137_141-170_174-203_207-236+
|
PF00023+68-94+Ankyrin_repeat|PF12796+105-172+Ankyrin_repeats_(3_copies)|PF13637+182-227+Ankyrin_repeats_(many_copies)
|
— |
PTHR24166+64-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
7qnl_AAA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
26245.200
|
6.420
|
-0.500
|
25.417
|
10.833
|
42.083
|
57.917
|
13.750
|
11.667
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
353.344
|
114.819
|
329.415
|
127.813
|
153.429
|
137.893
|
234.269
|
291.239
|
49.755
|
987.734
|
585.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.291
|
— |
-1.257
|
— | — |
0.776
|
0.973
|
— |
-4.435
|
— | — | — | — |