Hg_chrom3_TN10mRNA_6440
Organism: Heterodera glycines Gene Locus: chr3:10495253-10499846 Feature type: polypeptideProtein Sequence
Length: 703
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 1.489 | 0.957 | 0.834 | 1.588 | 0.802 | 0.644 | 0.782 | 1.359 | 1.115 | 1.121 | 1.59 | 1.818 | 0.602 | 1.016 | 1.057 | 0.886 | 0.647 | 0.875 | 0.669 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6106
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.560
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.589
|
0.144
|
0.009
|
0.578
|
0.182
|
0.186
|
0.075
|
0.021
|
0.136
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1
|
— |
P58545.2 BTB/POZ domain-containing protein 3 [Mus musculus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.779|GO:0110165_0.778|GO:0005622_0.723|GO:0005737_0.639|GO:0008150_0.630|GO:0043226_0.628|GO:0043229_0.611|GO:0009987_0.513|GO:0016020_0.501
|
IPR000210+122-227_124-206_124-237+|IPR002083+403-538_405-517_407-538_556-693_561-672_561-693+|IPR008974+394-545_546-701+|IPR011333+97-263_109-227+|IPR011705+241-351_244-349+
|
SM00061+405-517_561-672+|SM00225+124-237+|SM00875+241-351+
|
PF00651+122-227+BTB/POZ_domain|PF07707+244-349+BTB_And_C-terminal_Kelch|PF22486+407-538_561-693+MATH_domain
|
— |
PTHR45774+105-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-110
|
1.000
|
111-703
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
80055.790
|
5.212
|
-11.500
|
28.734
|
11.522
|
51.067
|
48.933
|
13.940
|
14.794
|
46.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
59.634
|
13.393
|
10.303
|
21.310
|
14.481
|
8.150
|
42.488
|
9.098
|
190.574
|
73.258
|
123.536
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.167
|
-0.588
|
-0.816
|
2.392
|
— |
2.366
|
— | — | — | — | — |
No JSON data available for plots.