Hg_chrom3_TN10mRNA_6443
Organism: Heterodera glycines Gene Locus: chr3:10517134-10517799 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.373 | 2.381 | 1.288 | 0.0 | 1.312 | 0.404 | 0.75 | 2.756 | 0.875 | 1.49 | 0.477 | 1.853 | 1.531 | 0.757 | 1.286 | 0.0 | 0.516 | 0.835 | 1.211 | 0.695 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6109
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.639
|
0.709
|
0.092
|
0.373
|
0.033
|
0.052
|
0.050
|
0.051
|
0.068
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008177
|
1.000
|
1.000
|
Hsc_gene_12108.t1
|
Hsc_gene_12108.t1
|
— |
A0A061I403.1 Protein adenylyltransferase FICD [Cricetulus griseus]
|
WP_302441273.1 Fic family protein [Bilophila wadsworthia]
|
No
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0003674_0.852|GO:0003824_0.758|GO:0005575_0.735|GO:0110165_0.730|GO:0016740_0.679|GO:0016772_0.657|GO:0016779_0.654|GO:0070566_0.650|GO:0070733_0.650|GO:0016020_0.630|GO:0008152_0.625|GO:0050896_0.619|GO:0006950_0.584|GO:0044238_0.582|GO:0071944_0.552|GO:0043170_0.550|GO:0019538_0.538|GO:0005886_0.534|GO:0009987_0.527|GO:0005622_0.514|GO:0005737_0.514|GO:0016787_0.514|GO:0043412_0.505|GO:0036211_0.504
|
IPR003812+1-93_3-51+|IPR036597+1-81_1-127+|IPR040198+1-122+
|
— |
PF02661+3-51+Fic/DOC_family
|
— |
PTHR13504+1-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
125-127
|
1.000
|
1-124
|
4u0z_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
14480.280
|
5.489
|
-3.500
|
29.921
|
14.961
|
44.882
|
55.118
|
14.961
|
14.961
|
48.031
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
6.461
|
0.309
|
0.435
|
0.368
|
0.778
|
0.863
|
0.615
|
0.279
|
1.382
|
25.860
|
15.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.