Hg_chrom3_TN10mRNA_6445
Organism: Heterodera glycines Gene Locus: chr3:10525318-10527884 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 1.257 | 0.983 | 0.699 | 1.201 | 0.924 | 0.563 | 0.338 | 1.251 | 1.704 | 1.331 | 1.192 | 1.814 | 0.52 | 0.689 | 1.255 | 0.554 | 0.648 | 0.866 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6111
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.441
|
0.286
|
0.021
|
0.423
|
0.214
|
0.240
|
0.240
|
0.117
|
0.323
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008178
|
1.000
|
1.000
|
Hsc_gene_18187.t1
|
Hsc_gene_18187.t1;Hsc_gene_22073.t1;Hsc_gene_23997.t1
|
— |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.728|GO:0005575_0.717|GO:0110165_0.693|GO:0005622_0.638|GO:0009987_0.607|GO:0005737_0.563|GO:0043226_0.548|GO:0043229_0.541
|
IPR000210+4-119_11-83_11-122+|IPR002083+278-410_280-391_281-401+|IPR008974+271-416+|IPR011333+1-123_2-117+|IPR011705+127-237_131-233+
|
SM00061+280-391+|SM00225+11-122+|SM00875+127-237+
|
PF00651+4-119+BTB/POZ_domain|PF07707+131-233+BTB_And_C-terminal_Kelch|PF22486+281-401+MATH_domain
|
— |
PTHR45774+3-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-444
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
49888.430
|
6.307
|
-0.500
|
25.450
|
11.036
|
46.622
|
53.378
|
12.838
|
12.613
|
45.721
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
139.861
|
15.414
|
34.458
|
73.628
|
267.934
|
309.228
|
269.016
|
218.204
|
47.441
|
130.857
|
95.107
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
2.117
|
1.211
|
1.833
|
— | — | — | — | — | — | — | — |
5.569
|
No JSON data available for plots.