Hg_chrom3_TN10mRNA_6448
Organism: Heterodera glycines Gene Locus: chr3:10541497-10543242 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.475 | 1.398 | 0.83 | 0.58 | 0.561 | 0.925 | 0.544 | 1.082 | 1.603 | 1.592 | 1.311 | 1.414 | 1.603 | 1.017 | 1.374 | 1.339 | 0.591 | 0.656 | 1.849 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6113
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,GKSKRKGRRTVRK,KRRSVRVTNKMNKRILKK,KKSAYKWEYNWVMKRSKI
|
46-69
|
0.989
|
39-69
|
0.895
|
— | — |
0.000
|
— | — |
0.761
|
0.130
|
0.005
|
0.334
|
0.060
|
0.035
|
0.049
|
0.012
|
0.139
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003686
|
1.000
|
2.000
|
Hsc_gene_22421.t1;Hsc_gene_22424.t1
|
Hsc_gene_17797.t1;Hsc_gene_22421.t1;Hsc_gene_22424.t1;Hsc_gene_25637.t1
|
— | — |
KAI3421888.1 hypothetical protein GPALN_012431 [Globodera pallida]
|
DAW43954
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
406-416
|
1.000
|
1-405
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
48134.190
|
10.647
|
35.500
|
25.481
|
12.740
|
48.077
|
51.923
|
17.548
|
7.933
|
43.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
354.817
|
292.019
|
125.182
|
96.572
|
129.638
|
117.589
|
168.271
|
137.558
|
25.219
|
1133.350
|
658.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.452
|
-1.733
|
-0.265
|
0.393
|
— |
0.525
|
— | — |
-5.614
|
— | — | — | — |
No JSON data available for plots.