Hg_chrom3_TN10mRNA_6450
Organism: Heterodera glycines Gene Locus: chr3:10548175-10549027 Feature type: polypeptideProtein Sequence
Length: 210
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.44 | 0.952 | 0.657 | 0.556 | 0.733 | 0.68 | 1.429 | 1.27 | 0.644 | 1.515 | 1.961 | 1.587 | 1.099 | 2.527 | 0.68 | 0.781 | 0.577 | 1.832 | 0.42 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6115
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKRSSHRRATRRHQR
|
46-66
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.837
|
0.366
|
0.129
|
0.353
|
0.129
|
0.070
|
0.121
|
0.014
|
0.092
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000506
|
5.000
|
2.000
|
Hsc_gene_22209.t2;Hsc_gene_22209.t3
|
Hsc_gene_1374.t1;Hsc_gene_22209.t2;Hsc_gene_22209.t3;Hsc_gene_24607.t2;Hsc_gene_4704.t1;Hsc_gene_4704.t2
|
— | — |
KAH7713554.1 pogo transposable element with KRAB domain-like protein [Aphelenchus avenae]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.882|GO:0110165_0.882|GO:0005622_0.828|GO:0043226_0.795|GO:0043229_0.782|GO:0016020_0.778|GO:0043227_0.729|GO:0043231_0.729|GO:0005634_0.668
|
IPR006600+22-90_28-90_32-90+|IPR009057+27-85+
|
SM00674+28-90+
|
PF03221+32-90+Tc5_transposase_DNA-binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-34
|
1.000
|
35-210
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
24613.530
|
11.605
|
32.000
|
33.810
|
12.381
|
52.381
|
47.619
|
25.238
|
8.571
|
45.238
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
30.429
|
2.689
|
1.796
|
1.389
|
1.062
|
2.409
|
1.216
|
1.119
|
136.103
|
26.669
|
73.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — |
-6.411
|
— | — | — |
No JSON data available for plots.