Hg_chrom3_TN10mRNA_6451
Organism: Heterodera glycines Gene Locus: chr3:10553367-10555338 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.028 | 1.285 | 1.356 | 0.572 | 1.335 | 0.637 | 0.493 | 0.967 | 1.228 | 1.568 | 0.502 | 0.975 | 1.304 | 0.903 | 1.184 | 1.026 | 0.634 | 1.172 | 0.85 | 0.812 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6116
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRRRNRRN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.564
|
0.416
|
0.002
|
0.708
|
0.081
|
0.089
|
0.193
|
0.067
|
0.045
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000558
|
3.000
|
4.000
|
Hsc_gene_22665.t1;Hsc_gene_22665.t2;Hsc_gene_3938.t1;Hsc_gene_3938.t2
|
— | — |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.772|GO:0110165_0.750|GO:0008150_0.711|GO:0005622_0.677|GO:0005737_0.613|GO:0009987_0.547
|
IPR000210+13-128_22-103_22-134+|IPR011333+1-161_3-128+|IPR011705+138-248_142-247+
|
SM00225+22-134+|SM00875+138-248+
|
PF00651+13-128+BTB/POZ_domain|PF07707+142-247+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+4-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
40620.010
|
4.409
|
-19.500
|
26.519
|
10.497
|
45.580
|
54.420
|
11.050
|
15.470
|
51.105
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
64.227
|
18.344
|
20.220
|
19.623
|
19.368
|
12.430
|
25.058
|
4.561
|
23.098
|
218.816
|
134.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.024
|
-1.554
|
2.604
|
— | — | — | — | — |
No JSON data available for plots.