Hg_chrom3_TN10mRNA_6452
Organism: Heterodera glycines Gene Locus: chr3:10565791-10570541 Feature type: polypeptideProtein Sequence
Length: 614
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 1.326 | 1.096 | 0.842 | 1.194 | 0.752 | 0.776 | 1.059 | 1.412 | 1.122 | 1.333 | 1.15 | 2.262 | 0.532 | 0.831 | 1.07 | 0.587 | 0.765 | 1.253 | 0.527 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6117
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.171
|
— | — |
0.638
|
0.148
|
0.011
|
0.477
|
0.187
|
0.112
|
0.067
|
0.027
|
0.085
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008179
|
1.000
|
1.000
|
Hsc_gene_26578.t1
|
Hsc_gene_18010.t1;Hsc_gene_20500.t1;Hsc_gene_25041.t1;Hsc_gene_26578.t1
|
— |
Q8L765.1 BTB/POZ and MATH domain-containing protein 1 [Arabidopsis thaliana]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.768|GO:0110165_0.754|GO:0008150_0.730|GO:0005622_0.714|GO:0005737_0.604|GO:0043226_0.570|GO:0043229_0.565|GO:0009987_0.560|GO:0003674_0.534
|
IPR000210+35-150_41-120_41-151+|IPR002083+314-445_316-426_317-437_466-597_471-589+|IPR008974+306-454_455-608+|IPR011333+15-178_18-146+|IPR011705+154-265_158-263+
|
SM00061+316-426+|SM00225+41-151+|SM00875+154-265+
|
PF00651+35-150+BTB/POZ_domain|PF07707+158-263+BTB_And_C-terminal_Kelch|PF22486+317-437_471-589+MATH_domain
|
— |
PTHR45774+26-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-614
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
69551.470
|
7.070
|
4.500
|
28.176
|
13.681
|
47.883
|
52.117
|
14.984
|
13.192
|
46.743
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
324.394
|
138.517
|
116.932
|
73.432
|
88.640
|
56.523
|
101.228
|
53.430
|
83.657
|
1120.716
|
676.262
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.477
|
-1.052
|
-0.560
|
— |
-0.634
|
0.852
|
— |
1.066
|
-3.873
|
— | — | — | — |
No JSON data available for plots.