Hg_chrom3_TN10mRNA_6453
Organism: Heterodera glycines Gene Locus: chr3:10575378-10577376 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 1.599 | 0.938 | 1.186 | 1.385 | 0.661 | 0.443 | 0.86 | 1.656 | 1.278 | 1.085 | 1.18 | 1.592 | 0.661 | 1.053 | 0.819 | 0.799 | 0.868 | 1.543 | 0.674 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6118
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.461
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.137
|
0.015
|
0.542
|
0.143
|
0.144
|
0.099
|
0.006
|
0.233
|
0.258
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001988
|
1.000
|
3.000
|
Hsc_gene_16029.t1;Hsc_gene_16029.t2;Hsc_gene_26577.t1
|
Hsc_gene_3935.t2
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.733|GO:0110165_0.733|GO:0005622_0.672|GO:0008150_0.661|GO:0005737_0.638|GO:0009987_0.608|GO:0043226_0.604|GO:0043229_0.592|GO:0003674_0.585|GO:0016020_0.523
|
IPR000210+16-73+|IPR002083+205-336_207-317_208-334+|IPR008974+198-347+|IPR011333+1-74_17-73+
|
SM00061+207-317+
|
PF00651+16-73+BTB/POZ_domain|PF22486+208-334+MATH_domain
|
— |
PTHR45774+93-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
40076.100
|
6.251
|
-1.000
|
27.507
|
11.748
|
47.564
|
52.436
|
14.040
|
13.467
|
46.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
22.881
|
14.738
|
15.905
|
21.314
|
26.511
|
14.485
|
21.400
|
10.511
|
17.948
|
39.817
|
30.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.858
|
— | — |
1.170
|
— | — | — | — | — |
No JSON data available for plots.