Hg_chrom3_TN10mRNA_6454
Organism: Heterodera glycines Gene Locus: chr3:10601347-10602800 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 1.073 | 0.606 | 1.503 | 0.726 | 1.446 | 0.916 | 1.538 | 1.311 | 1.04 | 0.894 | 1.056 | 1.852 | 0.838 | 1.465 | 1.282 | 0.799 | 0.466 | 2.564 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6119
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
17G06|AF4902471#TN10pacbiomikadoChromosome_2G24951
|
— | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,PKPS
|
24-44
|
0.821
|
23-44
|
0.996
|
— | — |
0.235
|
— | — |
0.573
|
0.294
|
0.023
|
0.402
|
0.138
|
0.031
|
0.143
|
0.028
|
0.126
|
0.226
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000079
|
6.000
|
11.000
|
Hsc_gene_11676.t1;Hsc_gene_24520.t1;Hsc_gene_24520.t2;Hsc_gene_24523.t1;Hsc_gene_24523.t2;Hsc_gene_3438.t1;Hsc_gene_5165.t1;Hsc_gene_5520.t1;Hsc_gene_5520.t2;Hsc_gene_5521.t1;Hsc_gene_5521.t2
|
— | — | — |
AAO85455.1 putative gland protein G17G06 [Heterodera glycines]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+16-77+
|
— |
PF06918+16-77+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+16-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
375-390
|
1.000
|
1-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
43976.410
|
10.038
|
27.000
|
23.846
|
13.077
|
47.949
|
52.051
|
16.154
|
7.692
|
48.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
36.545
|
2.746
|
6.301
|
3.665
|
5.161
|
4.992
|
2.223
|
10.778
|
32.490
|
122.068
|
83.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
-2.147
|
— | — |
-4.300
|
— | — |
No JSON data available for plots.