Hg_chrom3_TN10mRNA_6456
Organism: Heterodera glycines Gene Locus: chr3:10615276-10620792 Feature type: polypeptideProtein Sequence
Length: 1,565
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.966 | 1.025 | 1.22 | 1.124 | 1.012 | 1.196 | 0.806 | 1.885 | 0.795 | 1.356 | 0.426 | 0.789 | 1.171 | 1.217 | 1.995 | 0.411 | 0.712 | 0.939 | 0.934 | 0.977 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6121
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RRKR,PELKRRY
|
12-35
|
0.993
|
— | — | — | — |
0.001
|
— | — |
0.690
|
0.532
|
0.029
|
0.547
|
0.170
|
0.091
|
0.066
|
0.026
|
0.167
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000492
|
5.000
|
2.000
|
Hsc_gene_15604.t1;Hsc_gene_8471.t1
|
— | — | — |
CAD2184719.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676|GO:0003677|GO:0003887|GO:0006260
|
— |
IPR004868+715-907+|IPR012337+710-872+|IPR023211+1327-1439+|IPR036397+671-813+|IPR043502+1057-1425+
|
— |
PF03175+715-907+DNA_polymerase_type_B,_organellar_and_viral
|
— |
PTHR33568+481-1533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
49-127;1519-1565
|
2.000
|
1-48;128-1518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
178389.430
|
7.372
|
26.500
|
29.137
|
12.524
|
45.431
|
54.569
|
16.358
|
12.780
|
49.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
197.882
|
2.520
|
1.627
|
0.995
|
2.129
|
7.628
|
12.155
|
5.768
|
758.890
|
284.257
|
487.671
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.850
|
— | — |
1.212
|
— |
-9.364
|
-6.540
|
— | — |
No JSON data available for plots.