Hg_chrom3_TN10mRNA_6460
Organism: Heterodera glycines Gene Locus: chr3:10661916-10666003 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 1.21 | 0.608 | 0.897 | 2.045 | 1.239 | 0.487 | 0.929 | 1.817 | 1.155 | 1.633 | 2.624 | 0.723 | 0.286 | 1.214 | 0.903 | 1.036 | 0.394 | 0.0 | 0.328 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6125
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKCAQLEKALILSEAKRKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.492
|
0.130
|
0.018
|
0.647
|
0.082
|
0.066
|
0.077
|
0.042
|
0.123
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000829
|
2.000
|
4.000
|
Hsc_gene_11709.t1;Hsc_gene_16030.t1;Hsc_gene_18205.t1;Hsc_gene_26573.t1
|
— | — |
P46575.2 Ubiquitin-ribosomal protein eL40 fusion protein [Eimeria bovis]
|
CAI59819.1 ubiquitin, partial [Nyctotherus ovalis]
|
No
|
-0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.906|GO:0110165_0.899|GO:0005622_0.847|GO:0043226_0.774|GO:0016020_0.756|GO:0043229_0.751|GO:0005737_0.673|GO:0043227_0.657|GO:0043231_0.622|GO:0008150_0.603
|
IPR000626+192-238_194-238+|IPR029071+183-237+
|
— |
PF00240+194-238+Ubiquitin_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29
|
1.000
|
30-269
|
9egw_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
30718.410
|
8.158
|
5.500
|
34.201
|
5.576
|
56.877
|
43.123
|
18.587
|
15.613
|
39.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
19.085
|
10.308
|
14.753
|
6.514
|
5.159
|
1.857
|
3.339
|
4.007
|
83.551
|
3.606
|
37.868
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.065
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.