SCN Proteipedia

Hg_chrom3_TN10mRNA_6472

Organism: Heterodera glycines Gene Locus: chr3:10743579-10745633 Feature type: polypeptide

Protein Sequence

Length: 179

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.715	0.909	0.813	1.156	1.769	1.719	0.798	1.676	2.11	0.981	1.778	2.629	0.621	0.215	0.798	0.638	0.824	0.508	0.0	0.493	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6137	—	—	1.222	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.951

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.434	0.160	0.010	0.550	0.297	0.134	0.081	0.001	0.188	0.261

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000829	2.000	4.000	Hsc_gene_11709.t1;Hsc_gene_16030.t1;Hsc_gene_18205.t1;Hsc_gene_26573.t1	—	—	P62975.1 Ubiquitin [Oryctolagus cuniculus]	2K6D_B Chain B, Ubiquitin [Homo sapiens];2KJH_B Chain B, Ubiquitin [Homo sapiens];2N13_C Chain C, Ubiquitin [Homo sapiens];4BBN_F Chain F, POLYUBIQUITIN-B [Bos taurus];4DHJ_D Chain D, Ubiquitin [Homo sapiens];4DHJ_H Chain H, Ubiquitin [Homo sapiens];4DHZ_E Chain E, Ubiquitin [Homo sapiens];5BNB_E Chain E, Polyubiquitin-B [Homo sapiens];5BNB_F Chain F, Polyubiquitin-B [Homo sapiens];5BNB_G Chain G, Polyubiquitin-B [Homo sapiens];5BNB_I Chain I, Polyubiquitin-B [Homo sapiens];5WVO_A Chain A, Ubiquitin [Homo sapiens];5WVO_B Chain B, Ubiquitin [Homo sapiens];6FX4_B Chain B, Polyubiquitin-B [Homo sapiens];6FX4_D Chain D, Polyubiquitin-B [Homo sapiens];6FYH_B Chain B, Polyubiquitin-B [Homo sapiens];6J99_L Chain L, Ubiquitin [Homo sapiens];6KIU_O Chain O, Ubiquitin [Homo sapiens];6KIV_O Chain O, Ubiquitin [Homo sapiens];6KIW_O Chain O, Ubiquitin [Homo sapiens];6O96_L Chain L, Polyubiquitin-B [Homo sapiens];6UH5_Q Chain Q, Ubiquitin [Homo sapiens];6ULH_E Chain E, Ubiquitin [Homo sapiens];6UMP_E Chain E, Ubiquitin [Homo sapiens];6UMS_E Chain E, Ubiquitin [Homo sapiens];6WKR_F Chain F, Ubiquitin [Homo sapiens];6WKR_T Chain T, Ubiquitin [Homo sapiens];7BWD_L Chain L, Ubiquitin [Homo sapiens];7BWD_M Chain M, Ubiquitin [Homo sapiens];7K6P_L Chain L, Ubiquitin [Homo sapiens];7K6Q_L Chain L, Ubiquitin [Homo sapiens];7MEX_C Chain C, Ubiquitin [Homo sapiens];8EFW_C Chain C, Ubiquitin [Homo sapiens];8EFX_B Chain B, Ubiquitin [Homo sapiens];8IVB_A Chain A, Ubiquitin [Homo sapiens];8WG5_U Chain U, Ubiquitin B [Homo sapiens]	No	0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.877\|GO:0110165_0.867\|GO:0005622_0.802\|GO:0043226_0.753\|GO:0043229_0.734\|GO:0016020_0.686\|GO:0005737_0.628\|GO:0043227_0.611\|GO:0008150_0.596\|GO:0043231_0.591	IPR000626+103-175_103-179_105-176+\|IPR019956+114-134_135-155_156-177+\|IPR029071+96-178+\|IPR050158+104-178+	SM00213+103-175+	PF00240+105-176+Ubiquitin_family	—	PTHR10666+104-178+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6	1.000	7-179	3vfk_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.512	20339.510	7.667	4.000	34.078	7.263	54.190	45.810	18.994	15.084	38.547

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	76.549	45.555	92.874	40.269	25.717	28.376	20.460	72.419	238.089	34.210	121.587

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.796	—	-1.097	-0.677	—	—	1.246	-1.682	—	—	—	—	—

No JSON data available for plots.

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