Hg_chrom3_TN10mRNA_6474
Organism: Heterodera glycines Gene Locus: chr3:10759712-10762336 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 1.195 | 1.062 | 1.128 | 1.402 | 0.779 | 0.528 | 0.935 | 1.142 | 1.389 | 1.239 | 1.649 | 1.947 | 0.539 | 0.954 | 0.968 | 0.804 | 0.85 | 1.258 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6139
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.688
|
0.147
|
0.005
|
0.506
|
0.144
|
0.066
|
0.058
|
0.031
|
0.157
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000828
|
5.000
|
1.000
|
Hsc_gene_22662.t1
|
— | — |
Q9XHZ8.1 BTB/POZ domain-containing protein At1g21780 [Arabidopsis thaliana]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.810|GO:0110165_0.797|GO:0005622_0.746|GO:0008150_0.689|GO:0005737_0.618|GO:0043226_0.603|GO:0043229_0.581|GO:0009987_0.550|GO:0016020_0.527
|
IPR000210+12-118_19-92_19-123+|IPR002083+281-411_283-392_285-401+|IPR008974+274-422+|IPR011333+1-150_2-118+|IPR011705+127-237_133-231+
|
SM00061+283-392+|SM00225+19-123+|SM00875+127-237+
|
PF00651+12-118+BTB/POZ_domain|PF07707+133-231+BTB_And_C-terminal_Kelch|PF22486+285-401+MATH_domain
|
— |
PTHR45774+4-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-428
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
49133.490
|
6.128
|
-2.000
|
28.972
|
12.383
|
48.832
|
51.168
|
14.720
|
14.252
|
45.093
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
224.759
|
199.062
|
157.176
|
151.183
|
134.168
|
111.698
|
85.583
|
120.807
|
310.949
|
390.229
|
356.252
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.572
|
-0.534
|
— | — | — |
-0.376
|
— |
-0.357
|
— | — | — | — | — |
No JSON data available for plots.