Hg_chrom3_TN10mRNA_6479
Organism: Heterodera glycines Gene Locus: chr3:10776401-10777123 Feature type: polypeptideProtein Sequence
Length: 55
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.326 | 1.268 | 0.331 | 1.881 | 1.818 | 0.0 | 0.866 | 1.818 | 1.616 | 0.983 | 0.275 | 2.139 | 0.505 | 1.049 | 0.742 | 0.779 | 0.596 | 0.275 | 0.0 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6144
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.411
|
0.388
|
0.454
|
0.538
|
0.213
|
0.291
|
0.169
|
0.308
|
0.275
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003690
|
2.000
|
1.000
|
Hsc_gene_14201.t1
|
Hsc_gene_14201.t1
|
— |
O17953.2 Dihydrolipoyl dehydrogenase, mitochondrial [Caenorhabditis elegans]
|
NP_001255811.1 Dihydrolipoyl dehydrogenase, mitochondrial [Caenorhabditis elegans];CBK19462.1 Dihydrolipoyl dehydrogenase, mitochondrial [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.842|GO:0110165_0.827|GO:0008150_0.673|GO:0005622_0.662|GO:0005737_0.641|GO:0003674_0.634|GO:0016020_0.563|GO:0043226_0.534|GO:0043229_0.534|GO:0009987_0.502
|
IPR004099+1-42+|IPR016156+1-47_1-54+|IPR050151+1-47+
|
— |
PF02852+1-42+Pyridine_nucleotide-disulphide_oxidoreductase,_dimerisation_domain
|
— |
PTHR22912+1-47+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-55
|
1zy8_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
5779.550
|
4.500
|
-3.000
|
21.818
|
9.091
|
36.364
|
63.636
|
9.091
|
12.727
|
56.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
277.832
|
75.948
|
148.162
|
272.643
|
477.989
|
329.760
|
336.411
|
209.982
|
56.221
|
479.265
|
297.960
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
1.706
|
0.989
|
0.778
|
-0.521
|
— |
-0.758
|
0.825
|
-3.215
|
— | — | — | — |
No JSON data available for plots.