Hg_chrom3_TN10mRNA_6481
Organism: Heterodera glycines Gene Locus: chr3:10800573-10802961 Feature type: polypeptideProtein Sequence
Length: 295
(Signal peptide: 1-45)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.631 | 0.247 | 1.169 | 0.508 | 1.825 | 1.09 | 3.051 | 0.603 | 1.099 | 0.616 | 0.997 | 0.847 | 1.499 | 2.006 | 1.211 | 0.611 | 0.822 | 0.261 | 0.499 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6146
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-45
|
0.556
|
0.617
|
0.000
|
0.000
|
0.583
|
0.500
|
0.008
|
0.568
|
0.026
|
0.014
|
0.032
|
0.027
|
0.136
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003507
|
2.000
|
1.000
|
Hsc_gene_22257.t1
|
Hsc_gene_22257.t1
|
— |
Q1D5X9.1 Ribonuclease 3 [Myxococcus xanthus DK 1622]
|
KAI1723142.1 double-stranded RNA binding motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.808|GO:0005575_0.792|GO:0110165_0.792|GO:0009987_0.738|GO:0003674_0.724|GO:0005488_0.684|GO:0016020_0.684|GO:0065007_0.672|GO:0050789_0.670|GO:0050794_0.532|GO:0005622_0.513
|
IPR014720+118-186_119-182_119-185+|IPR051740+103-188+
|
SM00358+119-185+
|
PF00035+119-182+Double-stranded_RNA_binding_motif
|
— |
PTHR46054+103-188+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-239;295-295
|
1.000
|
240-294
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
32196.870
|
11.455
|
37.000
|
24.407
|
11.186
|
46.441
|
53.559
|
20.000
|
4.407
|
52.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
80.857
|
23.487
|
20.611
|
9.789
|
4.699
|
1.988
|
17.556
|
6.791
|
56.428
|
279.584
|
183.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.400
|
-0.965
|
— | — |
3.146
|
— |
1.514
|
— | — |
-5.472
|
— | — |