SCN Proteipedia

Hg_chrom3_TN10mRNA_6483

Organism: Heterodera glycines Gene Locus: chr3:10820770-10830131 Feature type: polypeptide

Protein Sequence

Length: 920

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.834	0.885	0.87	0.675	0.924	1.059	1.074	0.815	1.57	1.293	0.988	1.471	1.208	0.753	1.02	0.901	1.051	1.087	0.334	0.799	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6148	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.600

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	mitochondrion	—	RKPLLGNVMRMARDKVMKK,KKSGAGIYTYSADGGKKSK	21-42	0.939	—	—	—	—	0.000	—	—	0.336	0.447	0.036	0.390	0.312	0.266	0.130	0.233	0.269	0.088

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000297	4.000	5.000	Hsc_gene_22204.t1;Hsc_gene_22204.t2;Hsc_gene_22217.t1;Hsc_gene_22222.t1;Hsc_gene_295.t1	—	—	Q64428.2 Trifunctional enzyme subunit alpha, mitochondrial [Rattus norvegicus]	KAH7728307.1 trifunctional enzyme subunit alpha [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003857\|GO:0004300\|GO:0005739\|GO:0006631\|GO:0006635\|GO:0016491\|GO:0016507\|GO:0016616\|GO:0070403	GO:0008150_0.899\|GO:0009987_0.843\|GO:0003674_0.827\|GO:0005575_0.805\|GO:0008152_0.742\|GO:0110165_0.731\|GO:0003824_0.718\|GO:0044237_0.707\|GO:0044238_0.695\|GO:0016020_0.661\|GO:0044281_0.657\|GO:0005622_0.648\|GO:0006082_0.633\|GO:0019752_0.633\|GO:0043436_0.633\|GO:0005737_0.624\|GO:0009056_0.614\|GO:0032787_0.614\|GO:0006629_0.607\|GO:0044255_0.602\|GO:0044248_0.600\|GO:0006631_0.598\|GO:0043226_0.594\|GO:0044282_0.591\|GO:0016054_0.590\|GO:0046395_0.590\|GO:0072329_0.577\|GO:0043229_0.574\|GO:0016042_0.563\|GO:0044242_0.562\|GO:0006635_0.558\|GO:0009062_0.558\|GO:0019395_0.558\|GO:0030258_0.558\|GO:0034440_0.558\|GO:0043227_0.545\|GO:0043231_0.528\|GO:0016491_0.508	IPR001753+207-376+\|IPR006108+698-793_833-916+\|IPR006176+517-695+\|IPR008927+697-814_833-919+\|IPR012803+206-919+\|IPR021109+35-152_37-127+\|IPR029045+197-504+\|IPR036291+517-697+\|IPR050136+193-919+	—	PF00378+207-376+Enoyl-CoA_hydratase/isomerase\|PF00725+698-793_833-916+3-hydroxyacyl-CoA_dehydrogenase,_C-terminal_domain\|PF02737+517-695+3-hydroxyacyl-CoA_dehydrogenase,_NAD_binding_domain\|PF08284+40-137+Retroviral_aspartyl_protease	G3DSA:1.10.1040.50:FF:000002+699-914+Trifunctional_enzyme_subunit_alpha,_mitochondrial\|G3DSA:3.40.50.720:FF:000009+515-700+Fatty_oxidation_complex,_alpha_subunit\|G3DSA:3.90.226.10:FF:000011+196-512+Fatty_acid_oxidation_complex_subunit_alpha	PTHR43612+193-919+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6	1.000	7-920	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.788	100841.420	8.525	18.500	23.478	9.130	44.130	55.870	13.152	10.326	50.543

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	85.333	9.056	12.348	20.641	22.980	23.972	84.262	8.222	219.449	140.689	174.443

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.053	0.854	—	—	1.824	-1.659	3.502	—	-3.216	—	—	—

No JSON data available for plots.

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