Hg_chrom3_TN10mRNA_6484
Organism: Heterodera glycines Gene Locus: chr3:10836556-10838917 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 0.61 | 0.817 | 0.258 | 1.186 | 1.152 | 1.115 | 1.124 | 0.999 | 1.367 | 0.965 | 1.102 | 1.144 | 0.936 | 1.223 | 0.91 | 0.921 | 1.135 | 0.864 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6149
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.678
|
0.333
|
0.114
|
0.616
|
0.147
|
0.045
|
0.083
|
0.181
|
0.057
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003691
|
2.000
|
1.000
|
Hsc_gene_22206.t1
|
— | — |
O95861.1 3'(2'),5'-bisphosphate nucleotidase 1 [Homo sapiens]
|
KAH7718896.1 CRE-AAT-6 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046854
|
GO:0005575_0.682|GO:0110165_0.678|GO:0003674_0.574|GO:0005622_0.571|GO:0005737_0.541
|
IPR000760+2-243_3-23_173-194_205-229+|IPR020550+208-222+|IPR020583+64-77+|IPR050725+2-257+
|
— |
PF00459+2-243+Inositol_monophosphatase_family
|
— |
PTHR43028+2-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
263-267
|
1.000
|
1-262
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
29169.380
|
8.482
|
5.000
|
26.217
|
8.989
|
45.318
|
54.682
|
14.607
|
11.610
|
50.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkmagenta
|
101.077
|
3.508
|
2.950
|
10.589
|
2.648
|
1.878
|
1.719
|
0.979
|
253.014
|
243.349
|
247.491
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.455
|
1.942
|
-2.033
|
— | — | — | — | — |
-4.379
|
-6.085
|
— | — |
No JSON data available for plots.