Hg_chrom3_TN10mRNA_6487
Organism: Heterodera glycines Gene Locus: chr3:10864193-10866055 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.984 | 0.179 | 1.259 | 0.531 | 1.154 | 2.17 | 1.465 | 1.923 | 0.684 | 1.143 | 0.699 | 1.357 | 0.855 | 0.148 | 1.57 | 1.209 | 0.0 | 1.049 | 0.592 | 1.357 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6151
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
45-65
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.797
|
0.257
|
0.029
|
0.486
|
0.130
|
0.070
|
0.128
|
0.062
|
0.038
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008183
|
1.000
|
1.000
|
Hsc_gene_12155.t2
|
Hsc_gene_12153.t1;Hsc_gene_12155.t1;Hsc_gene_12155.t2
|
— |
Q91VY9.1 Cytoplasmic 60S subunit biogenesis factor ZNF622 [Mus musculus]
|
KAI1716380.1 c2H2 type zinc-finger (2 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.912|GO:0005622_0.841|GO:0005737_0.772|GO:0008150_0.685|GO:0009987_0.628|GO:0003674_0.602|GO:0005488_0.564
|
IPR040025+2-128+
|
— | — | — |
PTHR13182+2-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
14449.110
|
6.638
|
0.500
|
30.000
|
12.308
|
47.692
|
52.308
|
16.154
|
13.846
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
darkmagenta
|
143.118
|
1.071
|
1.716
|
4.191
|
4.109
|
5.767
|
6.474
|
3.164
|
14.992
|
604.963
|
352.118
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.831
|
— | — | — | — | — | — |
-5.444
|
— |
-6.561
|
— | — |
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