Hg_chrom3_TN10mRNA_6488
Organism: Heterodera glycines Gene Locus: chr3:10868295-10869281 Feature type: polypeptideProtein Sequence
Length: 105
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 2.215 | 1.039 | 0.0 | 1.429 | 1.465 | 0.454 | 0.0 | 2.328 | 0.901 | 1.154 | 1.681 | 1.587 | 0.549 | 1.166 | 0.816 | 0.625 | 0.289 | 0.733 | 1.12 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6152
|
— | — |
0.889
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.718
|
0.368
|
0.064
|
0.551
|
0.121
|
0.086
|
0.105
|
0.034
|
0.147
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003506
|
2.000
|
1.000
|
Hsc_gene_24883.t1
|
— | — |
P42649.2 14-3-3 protein 2 [Entamoeba histolytica HM-1:IMSS]
|
AAA80186.1 14-3-3-2 protein [Entamoeba histolytica]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.897|GO:0110165_0.888|GO:0008150_0.824|GO:0005622_0.775|GO:0009987_0.746|GO:0005737_0.718|GO:0043226_0.708|GO:0016020_0.694|GO:0065007_0.642|GO:0050789_0.633|GO:0003674_0.630|GO:0005488_0.621|GO:0043227_0.603|GO:0050794_0.565|GO:0043229_0.541
|
IPR000308+21-104_28-54_55-81+|IPR023410+21-104+|IPR036815+1-105_6-104+
|
— |
PF00244+21-104+14-3-3_protein
|
— |
PTHR18860+21-104+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-105
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
12179.770
|
5.185
|
-1.000
|
27.619
|
10.476
|
52.381
|
47.619
|
13.333
|
14.286
|
41.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
29.782
|
0.000
|
0.143
|
0.368
|
1.187
|
0.624
|
0.609
|
0.000
|
8.529
|
122.801
|
73.827
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.