Hg_chrom3_TN10mRNA_6490
Organism: Heterodera glycines Gene Locus: chr3:10891711-10893870 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 1.05 | 1.173 | 0.89 | 1.29 | 0.744 | 0.461 | 1.29 | 1.075 | 1.656 | 1.124 | 2.277 | 1.882 | 0.682 | 0.658 | 0.968 | 0.582 | 1.124 | 0.248 | 0.569 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6154
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.427
|
0.258
|
0.024
|
0.578
|
0.217
|
0.119
|
0.119
|
0.010
|
0.199
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000828
|
5.000
|
1.000
|
Hsc_gene_22662.t1
|
Hsc_gene_3941.t1
|
— |
Q9XHZ8.1 BTB/POZ domain-containing protein At1g21780 [Arabidopsis thaliana]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.796|GO:0110165_0.762|GO:0005622_0.716|GO:0008150_0.640|GO:0043226_0.605|GO:0043229_0.579|GO:0005737_0.550|GO:0003674_0.523|GO:0009987_0.505
|
IPR000210+13-118_19-95_19-126+|IPR011333+1-123_2-118+|IPR011705+136-191+
|
SM00225+19-126+
|
PF00651+13-118+BTB/POZ_domain|PF07707+136-191+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+4-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-310
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
35037.610
|
5.111
|
-7.000
|
27.419
|
11.613
|
45.161
|
54.839
|
13.226
|
14.194
|
46.129
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
156.546
|
7.767
|
14.366
|
18.714
|
27.066
|
11.219
|
30.725
|
12.508
|
23.285
|
621.538
|
365.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.134
|
— | — |
-1.258
|
1.462
|
— |
1.441
|
— | — | — | — | — |
No JSON data available for plots.