Hg_chrom3_TN10mRNA_6491
Organism: Heterodera glycines Gene Locus: chr3:10894091-10898959 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.188 | 1.125 | 0.929 | 0.278 | 1.344 | 0.758 | 0.576 | 0.941 | 0.777 | 1.526 | 1.303 | 2.214 | 1.867 | 0.62 | 0.713 | 0.576 | 1.322 | 0.896 | 0.207 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6155
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.374
|
0.363
|
0.203
|
0.530
|
0.164
|
0.185
|
0.173
|
0.095
|
0.217
|
0.805
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000246
|
7.000
|
3.000
|
Hsc_gene_16223.t1;Hsc_gene_24660.t1;Hsc_gene_25832.t1
|
— | — |
Q4R3G2.1 Serpin B6 [Macaca fascicularis]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.799|GO:0110165_0.788|GO:0008150_0.720|GO:0003674_0.620|GO:0005622_0.604|GO:0016020_0.603|GO:0009987_0.562|GO:0005737_0.541|GO:0005488_0.531|GO:0065007_0.508|GO:0071944_0.505|GO:0043226_0.502
|
IPR000215+15-366+|IPR023796+15-366_21-372+|IPR036186+9-369+|IPR042178+19-341+|IPR042185+179-366+
|
SM00093+21-372+
|
PF00079+15-366+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+15-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
41751.130
|
6.402
|
-0.500
|
27.151
|
11.290
|
47.043
|
52.957
|
13.978
|
13.172
|
47.043
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
349.131
|
85.789
|
110.271
|
84.715
|
218.981
|
197.471
|
318.964
|
79.852
|
737.495
|
563.309
|
637.960
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.339
|
— |
0.704
|
-1.420
|
2.146
|
— |
-2.943
|
— | — | — |
No JSON data available for plots.