Hg_chrom3_TN10mRNA_6496
Organism: Heterodera glycines Gene Locus: chr3:10934856-10937583 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.415 | 0.831 | 0.974 | 0.924 | 1.339 | 0.916 | 0.531 | 0.893 | 1.984 | 1.207 | 1.218 | 3.676 | 1.736 | 0.343 | 1.276 | 0.638 | 0.585 | 0.812 | 4.808 | 0.263 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6159
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.472
|
0.406
|
0.027
|
0.624
|
0.112
|
0.189
|
0.310
|
0.077
|
0.186
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003689
|
3.000
|
0.000
|
0.000
|
Hsc_gene_14189.t1
|
— |
P08753.3 Guanine nucleotide-binding protein G(i) subunit alpha-3 [Rattus norvegicus]
|
KAK6011859.1 g-protein alpha subunit, partial [Ostertagia ostertagi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0007186|GO:0019001|GO:0031683
|
GO:0005575_0.924|GO:0110165_0.916|GO:0008150_0.851|GO:0016020_0.795|GO:0009987_0.711|GO:0071944_0.696|GO:0005622_0.674|GO:0050896_0.667|GO:0005886_0.660|GO:0065007_0.657|GO:0050789_0.639|GO:0050794_0.620|GO:0051716_0.577|GO:0003674_0.566|GO:0005737_0.552|GO:0023052_0.552|GO:0007154_0.550|GO:0043226_0.547|GO:0007165_0.537
|
IPR001019+1-112_9-97_9-98_13-30_35-63_81-90+|IPR027417+3-98_10-101+
|
SM00275+1-112+
|
PF00503+9-98+G-protein_alpha_subunit
|
G3DSA:3.40.50.300:FF:003800+1-108+Guanine_nucleotide-binding_protein_G(k)_subunit_alpha
|
PTHR10218+9-97+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-112
|
8yh6_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
13546.960
|
7.752
|
2.000
|
29.464
|
15.179
|
44.643
|
55.357
|
16.071
|
13.393
|
34.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
91.391
|
51.182
|
51.531
|
46.037
|
64.867
|
48.888
|
76.432
|
51.772
|
39.152
|
223.956
|
144.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.463
|
— |
0.656
|
— |
0.705
|
— | — | — | — | — |
No JSON data available for plots.