Hg_chrom3_TN10mRNA_6498
Organism: Heterodera glycines Gene Locus: chr3:10957625-10961430 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 1.128 | 1.074 | 0.436 | 1.02 | 0.974 | 0.628 | 0.738 | 0.891 | 0.884 | 1.758 | 1.986 | 1.641 | 0.974 | 0.99 | 1.025 | 0.692 | 0.831 | 2.434 | 1.117 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6160
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.246
|
0.490
|
0.099
|
0.709
|
0.204
|
0.078
|
0.138
|
0.020
|
0.379
|
0.469
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008185
|
1.000
|
1.000
|
Hsc_gene_16048.t1
|
— | — |
Q9JLT2.1 Trehalase [Mus musculus]
|
KAI3415246.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.850|GO:0005575_0.794|GO:0110165_0.790|GO:0003674_0.780|GO:0008152_0.717|GO:0044238_0.652|GO:0003824_0.649|GO:0016020_0.616|GO:0009056_0.612|GO:0016787_0.601|GO:0016798_0.569|GO:0004553_0.568|GO:0015927_0.563|GO:0005975_0.542|GO:0005984_0.533|GO:0005991_0.533|GO:0005993_0.533|GO:0009311_0.533|GO:0009313_0.533|GO:0016052_0.533|GO:0046352_0.533
|
IPR001661+5-467_5-470_129-147_197-214_232-249_271-288_391-407+|IPR008928+7-464+|IPR012341+1-472+|IPR018232+87-100+
|
— |
PF01204+5-467+Trehalase
|
— |
PTHR23403+5-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
466-474
|
1.000
|
1-465
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
55123.250
|
9.945
|
24.500
|
29.958
|
14.346
|
50.000
|
50.000
|
17.932
|
12.025
|
45.359
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
291.076
|
3.892
|
8.782
|
16.101
|
19.191
|
261.218
|
55.674
|
300.885
|
3.598
|
1021.106
|
585.031
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.911
|
0.989
|
— |
3.778
|
-2.220
|
— |
-2.287
|
-8.233
|
— |
-5.507
|
— | — |
No JSON data available for plots.