Hg_chrom3_TN10mRNA_6501
Organism: Heterodera glycines Gene Locus: chr3:10978992-10981331 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.452 | 1.806 | 1.059 | 1.004 | 1.78 | 0.249 | 0.693 | 0.485 | 1.294 | 0.918 | 1.618 | 1.142 | 2.427 | 0.56 | 0.594 | 0.555 | 1.114 | 0.736 | 1.494 | 1.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6163
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.360
|
0.171
|
0.046
|
0.471
|
0.193
|
0.063
|
0.030
|
0.014
|
0.367
|
0.336
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000201
|
3.000
|
8.000
|
Hsc_gene_18009.t1;Hsc_gene_18323.t1;Hsc_gene_20509.t1;Hsc_gene_20518.t1;Hsc_gene_2249.t1;Hsc_gene_22897.t1;Hsc_gene_25042.t1;Hsc_gene_304.t1
|
— | — | — |
KAI3415241.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.914|GO:0009987_0.845|GO:0065007_0.815|GO:0005575_0.810|GO:0110165_0.808|GO:0050789_0.807|GO:0003674_0.806|GO:0005622_0.739|GO:0005737_0.705|GO:0043226_0.691|GO:0003824_0.674|GO:0043229_0.673|GO:0050794_0.669|GO:0016020_0.667|GO:0016787_0.664|GO:0140096_0.658|GO:0008233_0.655|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0043227_0.637|GO:0043231_0.624|GO:0008152_0.620|GO:0043170_0.611|GO:0065008_0.586|GO:0031647_0.571|GO:0050896_0.549|GO:0005634_0.509|GO:0044238_0.506|GO:0051716_0.502
|
IPR002083+1-98_14-91+|IPR008974+1-103+
|
— |
PF22486+14-91+MATH_domain
|
— |
PTHR47022+2-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
12047.680
|
4.917
|
-2.500
|
31.068
|
15.534
|
50.485
|
49.515
|
14.563
|
16.505
|
44.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
20.906
|
1.684
|
5.625
|
1.921
|
3.176
|
1.388
|
4.356
|
3.175
|
6.893
|
78.298
|
47.696
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.497
|
— |
-1.428
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.