Hg_chrom3_TN10mRNA_6502
Organism: Heterodera glycines Gene Locus: chr3:10981761-10984209 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.572 | 0.871 | 1.068 | 0.704 | 0.578 | 0.637 | 1.408 | 1.252 | 1.294 | 1.067 | 2.32 | 1.643 | 0.813 | 1.035 | 1.288 | 0.508 | 1.195 | 1.083 | 0.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6164
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.626
|
0.466
|
0.034
|
0.531
|
0.179
|
0.115
|
0.152
|
0.059
|
0.099
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000084
|
11.000
|
5.000
|
Hsc_gene_16057.t1;Hsc_gene_17318.t1;Hsc_gene_17318.t2;Hsc_gene_18191.t1;Hsc_gene_26575.t1
|
Hsc_gene_20500.t1
|
— | — |
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.759|GO:0110165_0.712|GO:0008150_0.643|GO:0005622_0.638|GO:0043226_0.589|GO:0043229_0.587|GO:0003674_0.516|GO:0005737_0.511|GO:0016020_0.505
|
IPR000210+14-125_23-97_23-132+|IPR002083+270-354+|IPR008974+259-355+|IPR011333+1-129_3-125+
|
SM00225+23-132+
|
PF00651+14-125+BTB/POZ_domain|PF22486+270-354+MATH_domain
|
— |
PTHR45774+8-114+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
39831.330
|
9.149
|
16.000
|
23.944
|
11.549
|
45.070
|
54.930
|
14.930
|
9.014
|
50.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
9.689
|
5.245
|
7.690
|
11.055
|
21.192
|
12.538
|
12.792
|
3.133
|
4.289
|
11.556
|
8.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.908
|
-0.745
|
— |
-2.107
|
2.169
|
— | — | — | — | — |
No JSON data available for plots.