Hg_chrom3_TN10mRNA_6504
Organism: Heterodera glycines Gene Locus: chr3:10997546-11001234 Feature type: polypeptideProtein Sequence
Length: 475
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 1.273 | 0.919 | 1.016 | 1.298 | 0.864 | 0.677 | 1.158 | 1.684 | 1.366 | 1.18 | 0.743 | 1.93 | 0.607 | 1.16 | 0.992 | 0.621 | 0.574 | 1.296 | 0.495 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6166
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.596
|
0.217
|
0.032
|
0.621
|
0.114
|
0.143
|
0.065
|
0.016
|
0.176
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001230
|
1.000
|
4.000
|
Hsc_gene_16060.t1;Hsc_gene_16060.t2;Hsc_gene_18190.t1;Hsc_gene_7840.t1
|
— | — |
F7ASZ0.1 BTB/POZ domain-containing protein 3 [Callithrix jacchus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.713|GO:0110165_0.711|GO:0005622_0.660|GO:0005737_0.619|GO:0043226_0.604|GO:0008150_0.598|GO:0043229_0.595|GO:0009987_0.530|GO:0003674_0.520
|
IPR000210+26-66_27-58+|IPR002083+253-384_255-365_258-376+|IPR008974+244-393_394-475+|IPR011333+2-70_7-117+|IPR011705+94-204_97-167+
|
SM00061+255-365+|SM00875+94-204+
|
PF00651+26-66+BTB/POZ_domain|PF07707+97-167+BTB_And_C-terminal_Kelch|PF22486+258-376+MATH_domain
|
— |
PTHR45774+69-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-475
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
54251.300
|
7.871
|
8.500
|
28.632
|
12.632
|
48.211
|
51.789
|
15.789
|
12.842
|
43.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
145.149
|
51.084
|
106.373
|
158.095
|
283.723
|
154.593
|
296.983
|
63.185
|
19.634
|
202.538
|
124.151
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
1.492
|
0.684
|
0.814
|
-0.863
|
0.952
|
-1.394
|
2.374
|
— | — | — | — | — |
No JSON data available for plots.