Hg_chrom3_TN10mRNA_6505
Organism: Heterodera glycines Gene Locus: chr3:11004095-11009244 Feature type: polypeptideProtein Sequence
Length: 750
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.333 | 0.97 | 1.149 | 1.667 | 0.513 | 0.714 | 0.533 | 1.57 | 1.045 | 1.293 | 1.02 | 1.963 | 0.744 | 0.816 | 1.143 | 0.568 | 0.727 | 1.436 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6167
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.828
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.628
|
0.150
|
0.010
|
0.553
|
0.117
|
0.146
|
0.052
|
0.089
|
0.137
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001992
|
2.000
|
2.000
|
Hsc_gene_16062.t1;Hsc_gene_16062.t2
|
Hsc_gene_16062.t1;Hsc_gene_16062.t2
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.770|GO:0110165_0.770|GO:0005622_0.699|GO:0008150_0.677|GO:0005737_0.593|GO:0009987_0.582|GO:0043226_0.569|GO:0043229_0.552|GO:0016020_0.501
|
IPR000210+13-124_22-99_22-130+|IPR002083+293-427_296-416_298-408_447-583_449-562_450-572_601-733_603-714_604-723+|IPR008974+286-434_435-590_591-744+|IPR011333+2-156_6-124+|IPR011705+134-244_138-242+
|
SM00061+298-408_449-562_603-714+|SM00225+22-130+|SM00875+134-244+
|
PF00651+13-124+BTB/POZ_domain|PF07707+138-242+BTB_And_C-terminal_Kelch|PF22486+296-416_450-572_604-723+MATH_domain
|
— |
PTHR45774+8-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-750
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
84760.600
|
4.926
|
-17.000
|
28.933
|
11.600
|
48.133
|
51.867
|
13.600
|
15.333
|
47.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
87.425
|
27.613
|
50.054
|
38.244
|
32.064
|
31.823
|
175.954
|
14.384
|
30.121
|
221.091
|
139.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
— | — | — | — |
2.475
|
-1.258
|
3.756
|
— | — | — | — | — |
No JSON data available for plots.