Hg_chrom3_TN10mRNA_6506
Organism: Heterodera glycines Gene Locus: chr3:11004095-11009244 Feature type: polypeptideProtein Sequence
Length: 751
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.332 | 0.993 | 1.194 | 1.664 | 0.512 | 0.713 | 0.533 | 1.568 | 1.044 | 1.291 | 1.018 | 1.96 | 0.743 | 0.815 | 1.141 | 0.568 | 0.726 | 1.434 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6167
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.828
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.634
|
0.148
|
0.010
|
0.551
|
0.115
|
0.144
|
0.052
|
0.089
|
0.136
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001992
|
2.000
|
2.000
|
Hsc_gene_16062.t1;Hsc_gene_16062.t2
|
Hsc_gene_16062.t1;Hsc_gene_16062.t2
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.768|GO:0110165_0.768|GO:0005622_0.698|GO:0008150_0.679|GO:0005737_0.592|GO:0009987_0.583|GO:0043226_0.566|GO:0043229_0.549
|
IPR000210+13-124_22-99_22-130+|IPR002083+293-428_296-417_298-409_448-584_450-563_451-573_602-734_604-715_605-724+|IPR008974+285-434_435-590_591-745+|IPR011333+2-156_6-124+|IPR011705+134-244_138-242+
|
SM00061+298-409_450-563_604-715+|SM00225+22-130+|SM00875+134-244+
|
PF00651+13-124+BTB/POZ_domain|PF07707+138-242+BTB_And_C-terminal_Kelch|PF22486+296-417_451-573_605-724+MATH_domain
|
— |
PTHR45774+8-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-751
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
84815.650
|
4.894
|
-18.000
|
29.028
|
11.451
|
48.202
|
51.798
|
13.582
|
15.446
|
47.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
87.425
|
27.613
|
50.054
|
38.244
|
32.064
|
31.823
|
175.954
|
14.384
|
30.121
|
221.091
|
139.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
— | — | — | — |
2.475
|
-1.258
|
3.756
|
— | — | — | — | — |
No JSON data available for plots.