Hg_chrom3_TN10mRNA_6509
Organism: Heterodera glycines Gene Locus: chr3:11023627-11024665 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.983 | 1.31 | 0.896 | 0.971 | 0.822 | 1.174 | 0.377 | 1.761 | 1.017 | 1.047 | 0.587 | 2.071 | 2.25 | 1.151 | 1.581 | 0.654 | 0.924 | 0.854 | 1.354 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6170
|
— | — |
1.667
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
16-54
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.829
|
0.146
|
0.036
|
0.398
|
0.076
|
0.104
|
0.030
|
0.022
|
0.096
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000247
|
9.000
|
1.000
|
Hsc_gene_2734.t1
|
— | — | — |
ADM16638.1 transposase [Meloidogyne javanica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+7-97+
|
— |
PF10551+7-97+MULE_transposase_domain
|
— |
PTHR47160+2-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
33071.000
|
8.489
|
10.000
|
25.000
|
16.197
|
45.423
|
54.577
|
15.141
|
9.859
|
46.831
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
32.035
|
0.766
|
4.919
|
5.500
|
3.699
|
3.254
|
0.201
|
2.772
|
1.028
|
131.466
|
75.564
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.458
|
2.708
|
— | — | — |
-4.009
|
— |
-3.643
|
-6.780
|
— |
-4.959
|
— | — |
No JSON data available for plots.