Hg_chrom3_TN10mRNA_6512
Organism: Heterodera glycines Gene Locus: chr3:11065010-11069105 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 1.378 | 1.212 | 1.022 | 1.358 | 0.807 | 0.661 | 0.833 | 1.399 | 1.176 | 1.094 | 1.089 | 1.852 | 0.783 | 0.794 | 1.217 | 0.546 | 0.673 | 1.567 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6173
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.575
|
0.235
|
0.024
|
0.610
|
0.173
|
0.298
|
0.093
|
0.010
|
0.191
|
0.123
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001994
|
2.000
|
2.000
|
Hsc_gene_22894.t1;Hsc_gene_22894.t2
|
— | — |
G3X9X1.1 Kelch repeat and BTB domain-containing protein 2 [Mus musculus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.752|GO:0110165_0.752|GO:0005622_0.661|GO:0008150_0.660|GO:0005737_0.579|GO:0009987_0.529|GO:0043226_0.526|GO:0043229_0.507
|
IPR000210+15-127_24-102_24-133+|IPR002083+296-429_301-410_301-429_468-530+|IPR008974+287-437_438-540+|IPR011333+2-159_6-127+|IPR011705+137-247_141-244+
|
SM00061+301-410+|SM00225+24-133+|SM00875+137-247+
|
PF00651+15-127+BTB/POZ_domain|PF00917+468-530+MATH_domain|PF07707+141-244+BTB_And_C-terminal_Kelch|PF22486+301-429+MATH_domain
|
— |
PTHR45774+10-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;540-540
|
1.000
|
14-539
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
60953.040
|
4.810
|
-15.500
|
27.593
|
12.037
|
48.519
|
51.481
|
12.778
|
14.815
|
48.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
50.400
|
31.735
|
47.129
|
36.460
|
40.476
|
22.085
|
45.848
|
26.191
|
2.410
|
124.971
|
72.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.858
|
1.063
|
— |
0.951
|
-5.850
|
4.165
|
— | — | — |
No JSON data available for plots.