Hg_chrom3_TN10mRNA_6513
Organism: Heterodera glycines Gene Locus: chr3:11074217-11076311 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.167 | 0.842 | 0.932 | 1.416 | 0.297 | 0.965 | 0.965 | 1.459 | 0.835 | 1.404 | 0.908 | 1.823 | 0.668 | 1.024 | 1.269 | 0.949 | 0.585 | 2.079 | 0.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6174
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.680
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.744
|
0.129
|
0.014
|
0.364
|
0.126
|
0.121
|
0.073
|
0.025
|
0.205
|
0.226
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001994
|
2.000
|
2.000
|
Hsc_gene_22894.t1;Hsc_gene_22894.t2
|
— | — |
Q0V9W6.2 BTB/POZ domain-containing protein 6 [Xenopus tropicalis]
|
KAI3415241.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.743|GO:0110165_0.739|GO:0008150_0.719|GO:0005622_0.704|GO:0043226_0.665|GO:0005737_0.653|GO:0003674_0.650|GO:0043229_0.650|GO:0009987_0.649|GO:0016020_0.564|GO:0043227_0.552|GO:0043231_0.529
|
IPR002083+108-241_113-222_113-234+|IPR008974+102-251+
|
SM00061+113-222+
|
PF22486+113-234+MATH_domain
|
— |
PTHR47022+105-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
259-259
|
1.000
|
1-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
29314.260
|
8.153
|
5.500
|
29.344
|
13.514
|
50.193
|
49.807
|
16.216
|
13.127
|
48.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
106.557
|
122.189
|
123.597
|
128.335
|
141.368
|
103.087
|
118.952
|
125.190
|
118.795
|
53.571
|
81.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.441
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.