Hg_chrom3_TN10mRNA_6514
Organism: Heterodera glycines Gene Locus: chr3:11087159-11090617 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 1.427 | 0.93 | 0.97 | 1.108 | 0.984 | 0.548 | 1.151 | 1.648 | 1.452 | 1.008 | 1.204 | 1.705 | 0.639 | 1.253 | 1.06 | 0.293 | 0.62 | 1.377 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6175
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.511
|
0.254
|
0.013
|
0.643
|
0.157
|
0.282
|
0.114
|
0.009
|
0.139
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000084
|
11.000
|
5.000
|
Hsc_gene_16057.t1;Hsc_gene_17318.t1;Hsc_gene_17318.t2;Hsc_gene_18191.t1;Hsc_gene_26575.t1
|
— | — |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.772|GO:0110165_0.764|GO:0005622_0.714|GO:0008150_0.675|GO:0043226_0.592|GO:0005737_0.584|GO:0009987_0.572|GO:0043229_0.566
|
IPR000210+19-132_28-107_28-138+|IPR011333+4-132_4-164+|IPR011705+142-252_145-249+
|
SM00225+28-138+|SM00875+142-252+
|
PF00651+19-132+BTB/POZ_domain|PF07707+145-249+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+13-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
44792.590
|
8.122
|
8.500
|
26.854
|
12.788
|
46.036
|
53.964
|
15.090
|
11.765
|
43.734
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
60.561
|
6.803
|
25.160
|
36.554
|
64.889
|
33.772
|
66.553
|
10.041
|
112.309
|
89.308
|
99.166
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.653
|
2.288
|
0.651
|
0.796
|
-0.927
|
0.989
|
-1.857
|
2.870
|
— | — | — | — | — |
No JSON data available for plots.