Hg_chrom3_TN10mRNA_6516
Organism: Heterodera glycines Gene Locus: chr3:11119015-11127643 Feature type: polypeptideProtein Sequence
Length: 920
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.314 | 1.643 | 0.692 | 0.337 | 0.616 | 2.285 | 0.815 | 2.337 | 0.725 | 0.925 | 0.329 | 2.238 | 0.574 | 0.857 | 0.821 | 1.755 | 1.14 | 0.758 | 0.753 | 0.256 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6177
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.839
|
0.108
|
0.003
|
0.387
|
0.053
|
0.052
|
0.058
|
0.029
|
0.075
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008186
|
1.000
|
1.000
|
Hsc_gene_15118.t1
|
Hsc_gene_15118.t1;Hsc_gene_23867.t1
|
— |
Q86MI0.1 Homeobox protein dve-1 [Caenorhabditis elegans]
|
KAI3415235.1 Homeobox domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0006338
|
GO:0008150_0.971|GO:0009987_0.929|GO:0065007_0.927|GO:0005575_0.924|GO:0050789_0.919|GO:0110165_0.917|GO:0050794_0.911|GO:0003674_0.873|GO:0032502_0.864|GO:0048856_0.864|GO:0005488_0.862|GO:0032501_0.853|GO:0016020_0.838|GO:0005622_0.834|GO:0007275_0.832|GO:0048518_0.826|GO:0008152_0.825|GO:0019222_0.825|GO:0031323_0.825|GO:0044237_0.825|GO:0050896_0.823|GO:0044238_0.822|GO:0080090_0.822|GO:0048522_0.819|GO:0043170_0.814|GO:0060255_0.814|GO:0043226_0.807|GO:0009058_0.798|GO:0009059_0.798|GO:0009889_0.798|GO:0010556_0.798|GO:0031326_0.798|GO:0044249_0.798|GO:0010467_0.796|GO:0010468_0.796|GO:0005515_0.784|GO:0009893_0.784|GO:0051716_0.784|GO:0006139_0.783|GO:0016070_0.783|GO:0019219_0.783|GO:0051252_0.783|GO:0090304_0.783|GO:0032774_0.777|GO:0034654_0.777|GO:0141187_0.777|GO:0010604_0.775|GO:0031325_0.772|GO:0043229_0.772|GO:0006351_0.769|GO:0097159_0.768|GO:0006355_0.766|GO:2001141_0.766|GO:0009891_0.761|GO:0031328_0.761|GO:0010557_0.755|GO:0003676_0.753|GO:0045935_0.747|GO:0051254_0.747|GO:0006357_0.744|GO:0006366_0.744|GO:0043227_0.742|GO:0045893_0.736|GO:1902680_0.736|GO:0048583_0.726|GO:0003677_0.720|GO:0003690_0.720|GO:0006950_0.720|GO:0043565_0.720|GO:1990837_0.720|GO:0043231_0.719|GO:0045944_0.717|GO:0140110_0.710|GO:0000976_0.709|GO:0001067_0.709|GO:0009790_0.707|GO:0009605_0.698|GO:0044419_0.697|GO:0019899_0.695|GO:0002376_0.692|GO:0003700_0.691|GO:0033554_0.691|GO:0009607_0.689|GO:0009792_0.689|GO:0043207_0.689|GO:0051707_0.689|GO:0005634_0.688|GO:0080134_0.688|GO:0000977_0.687|GO:0002682_0.683|GO:0005737_0.683|GO:0006952_0.683|GO:0098542_0.682|GO:0031347_0.681|GO:0006955_0.679|GO:0045087_0.679|GO:0140546_0.679|GO:0002831_0.678|GO:0032101_0.678|GO:0050776_0.678|GO:0045088_0.676|GO:0000785_0.673|GO:0000981_0.673|GO:0005694_0.673|GO:0043228_0.673|GO:0043232_0.673|GO:0006986_0.670|GO:0034514_0.670|GO:0034620_0.670|GO:0035966_0.670|GO:0035967_0.670|GO:0001216_0.668|GO:0001228_0.662|GO:0044877_0.661|GO:0051087_0.650|GO:0032991_0.632|GO:0005829_0.577|GO:0005667_0.559
|
IPR001356+190-261_194-256_200-257_824-897_826-892_835-892_836-893+|IPR009057+200-255_826-892+|IPR032392+3-107_5-103+|IPR038224+1-105+|IPR039673+184-609+
|
SM00389+190-261_824-897+
|
PF00046+835-892+Homeodomain|PF16534+5-103+Ubiquitin-like_oligomerisation_domain_of_SATB
|
G3DSA:1.10.10.60:FF:000169+825-893+DNA-binding_protein_SATB1
|
PTHR15116+184-609+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
259-920
|
1.000
|
1-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
98259.400
|
6.896
|
9.500
|
18.370
|
8.587
|
53.587
|
46.413
|
10.870
|
7.500
|
58.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1730.075
|
1436.950
|
1664.944
|
1478.803
|
1727.010
|
3707.139
|
2063.803
|
3143.987
|
681.006
|
1349.835
|
1063.194
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.096
|
— |
0.192
|
1.117
|
-0.835
|
— |
-0.464
|
— |
1.290
|
— | — | — |
No JSON data available for plots.