Hg_chrom3_TN10mRNA_6518
Organism: Heterodera glycines Gene Locus: chr3:11150738-11151777 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.417 | 1.417 | 1.292 | 0.525 | 1.1 | 1.041 | 0.483 | 0.508 | 1.354 | 1.715 | 0.923 | 2.09 | 1.551 | 0.781 | 0.414 | 0.653 | 0.416 | 1.0 | 0.39 | 0.896 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6179
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.697
|
0.166
|
0.021
|
0.573
|
0.102
|
0.221
|
0.092
|
0.014
|
0.122
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000831
|
2.000
|
4.000
|
Hsc_gene_15100.t1;Hsc_gene_15103.t1;Hsc_gene_16226.t1;Hsc_gene_25786.t1
|
Hsc_gene_15100.t1;Hsc_gene_16226.t1;Hsc_gene_25786.t1
|
— | — |
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.847|GO:0009987_0.706|GO:0005575_0.673|GO:0110165_0.663|GO:0065007_0.603|GO:0050789_0.594|GO:0005622_0.538|GO:0005737_0.533|GO:0008152_0.518
|
IPR000210+14-126_21-98_21-129+|IPR011333+2-128_6-124+|IPR011705+139-197+
|
SM00225+21-129+
|
PF00651+14-126+BTB/POZ_domain|PF07707+139-197+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+7-197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-197
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
21855.240
|
4.312
|
-10.000
|
22.843
|
10.152
|
40.102
|
59.898
|
9.137
|
13.706
|
48.731
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
9.464
|
6.568
|
22.306
|
13.412
|
11.609
|
9.150
|
28.464
|
3.559
|
7.675
|
0.000
|
3.289
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.534
|
0.892
|
-0.625
|
— | — |
1.641
|
-1.464
|
3.132
|
— | — | — | — | — |
No JSON data available for plots.