Hg_chrom3_TN10mRNA_6519
Organism: Heterodera glycines Gene Locus: chr3:11153415-11154897 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.653 | 0.923 | 1.925 | 1.015 | 0.651 | 0.604 | 1.269 | 0.902 | 0.96 | 1.538 | 2.09 | 1.551 | 0.683 | 0.622 | 0.798 | 0.999 | 0.769 | 0.781 | 1.045 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6180
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKALESKFVCKKCGKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.512
|
0.447
|
0.040
|
0.554
|
0.261
|
0.108
|
0.159
|
0.017
|
0.137
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001189
|
4.000
|
1.000
|
Hsc_gene_5345.t2
|
— | — | — | — |
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.820|GO:0110165_0.812|GO:0005622_0.737|GO:0008150_0.700|GO:0005737_0.666|GO:0016020_0.632|GO:0009987_0.579|GO:0003674_0.575|GO:0043226_0.571|GO:0065007_0.553|GO:0043229_0.549|GO:0050789_0.538|GO:0043227_0.536|GO:0043231_0.518
|
IPR001623+17-73_18-84_20-38_20-67_25-67_38-53+|IPR036869+13-89_15-69+
|
SM00271+17-73+
|
PF00226+20-67+DnaJ_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-197
|
8e2o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
22297.650
|
8.114
|
6.500
|
26.904
|
12.690
|
48.223
|
51.777
|
15.736
|
11.168
|
50.761
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
26.501
|
17.222
|
15.125
|
6.125
|
11.006
|
7.720
|
74.575
|
2.481
|
0.000
|
65.597
|
37.484
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.627
|
-1.193
|
— | — |
3.280
|
-1.743
|
5.053
|
— | — | — | — | — |
No JSON data available for plots.