Hg_chrom3_TN10mRNA_6524
Organism: Heterodera glycines Gene Locus: chr3:11165319-11166660 Feature type: polypeptideProtein Sequence
Length: 176
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.189 | 1.453 | 1.136 | 1.959 | 1.042 | 0.583 | 0.609 | 1.42 | 0.884 | 1.075 | 1.636 | 2.34 | 1.105 | 0.546 | 0.58 | 0.731 | 0.931 | 0.603 | 0.0 | 1.17 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6185
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKALESKFVCKKCGKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.532
|
0.343
|
0.055
|
0.567
|
0.289
|
0.096
|
0.156
|
0.012
|
0.139
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001189
|
4.000
|
1.000
|
Hsc_gene_5345.t2
|
— | — | — |
WP_182132323.1 ferredoxin [Nitrosopumilus sp. b1];KAF6244020.1 molecular chaperone DnaJ [Nitrosopumilus sp. b1]
|
WP_073281026
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.831|GO:0110165_0.829|GO:0008150_0.753|GO:0005622_0.747|GO:0009987_0.670|GO:0005737_0.656|GO:0065007_0.650|GO:0050789_0.633|GO:0016020_0.583|GO:0003674_0.529|GO:0050794_0.503
|
IPR001623+1-63_3-51_6-46_7-46+|IPR036869+4-68_7-50+
|
SM00271+3-51+
|
PF00226+6-46+DnaJ_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-176
|
2lo1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
19639.580
|
7.767
|
4.500
|
28.977
|
10.795
|
48.295
|
51.705
|
16.477
|
12.500
|
51.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
29.605
|
6.621
|
5.793
|
2.900
|
6.683
|
5.236
|
35.682
|
1.927
|
13.315
|
95.221
|
60.119
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.331
|
— | — | — |
2.775
|
— |
4.351
|
— | — | — | — | — |
No JSON data available for plots.