Hg_chrom3_TN10mRNA_6526
Organism: Heterodera glycines Gene Locus: chr3:11209030-11211890 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.373 | 1.002 | 0.815 | 1.411 | 0.858 | 0.609 | 0.492 | 1.619 | 1.224 | 1.074 | 1.042 | 2.242 | 0.757 | 0.924 | 1.069 | 0.645 | 0.656 | 1.363 | 0.753 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6187
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.576
|
0.166
|
0.036
|
0.463
|
0.220
|
0.201
|
0.071
|
0.017
|
0.179
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000559
|
2.000
|
5.000
|
Hsc_gene_16140.t1;Hsc_gene_19231.t1;Hsc_gene_19231.t2;Hsc_gene_25887.t1;Hsc_gene_4606.t1
|
— | — |
Q8K2J9.3 BTB/POZ domain-containing protein 6 [Mus musculus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.778|GO:0110165_0.771|GO:0005622_0.685|GO:0005737_0.617|GO:0008150_0.611|GO:0043226_0.560|GO:0043229_0.537
|
IPR000210+19-69+|IPR002083+238-369_239-371_241-368+|IPR008974+231-378+|IPR011333+1-106_16-69+|IPR011705+82-193_86-190+
|
SM00875+82-193+
|
PF00651+19-69+BTB/POZ_domain|PF07707+86-190+BTB_And_C-terminal_Kelch|PF22486+241-368+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+105-209+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+19-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
58211.440
|
4.983
|
-9.500
|
26.575
|
13.386
|
47.244
|
52.756
|
12.598
|
13.976
|
45.079
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
39.125
|
16.820
|
20.705
|
10.572
|
6.755
|
9.989
|
18.657
|
13.676
|
0.000
|
134.731
|
76.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.807
|
-0.861
|
— | — |
0.908
|
— | — |
-7.812
|
4.259
|
— | — | — |
No JSON data available for plots.