Hg_chrom3_TN10mRNA_6527
Organism: Heterodera glycines Gene Locus: chr3:11217166-11219726 Feature type: polypeptideProtein Sequence
Length: 581
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 1.161 | 1.158 | 0.653 | 1.492 | 0.618 | 0.656 | 0.688 | 1.568 | 1.279 | 1.252 | 1.114 | 1.865 | 0.861 | 1.054 | 1.033 | 0.367 | 0.861 | 1.059 | 0.81 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6188
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.486
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.578
|
0.174
|
0.024
|
0.599
|
0.197
|
0.228
|
0.071
|
0.016
|
0.152
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003697
|
1.000
|
2.000
|
Hsc_gene_15097.t1;Hsc_gene_15097.t2
|
Hsc_gene_15097.t1;Hsc_gene_15097.t2;Hsc_gene_24734.t1;Hsc_gene_4598.t1
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.769|GO:0110165_0.753|GO:0005622_0.695|GO:0008150_0.682|GO:0005737_0.626|GO:0043226_0.567|GO:0043229_0.552
|
IPR000210+9-117_18-97_18-128+|IPR002083+445-576_449-578+|IPR008974+286-432_433-581+|IPR011333+2-154_5-118+|IPR011705+132-242_135-241+
|
SM00225+18-128+|SM00875+132-242+
|
PF00651+9-117+BTB/POZ_domain|PF07707+135-241+BTB_And_C-terminal_Kelch|PF22486+449-578+MATH_domain
|
— |
PTHR45774+9-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-581
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
66462.170
|
5.403
|
-7.000
|
30.120
|
12.220
|
46.988
|
53.012
|
14.802
|
15.318
|
44.578
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
71.490
|
53.949
|
168.717
|
75.039
|
74.781
|
46.121
|
58.566
|
93.766
|
22.803
|
81.563
|
56.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.414
|
— |
-1.060
|
— |
-0.682
|
— |
0.916
|
— | — | — | — | — | — |
No JSON data available for plots.