Hg_chrom3_TN10mRNA_6529
Organism: Heterodera glycines Gene Locus: chr3:11236766-11237310 Feature type: polypeptideProtein Sequence
Length: 114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.122 | 0.612 | 1.595 | 0.605 | 0.585 | 0.9 | 1.358 | 0.877 | 0.78 | 2.252 | 0.665 | 3.096 | 0.975 | 0.506 | 0.895 | 0.376 | 1.007 | 0.93 | 0.0 | 0.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6190
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
3.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.507
|
0.363
|
0.140
|
0.668
|
0.066
|
0.171
|
0.114
|
0.016
|
0.160
|
0.262
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001069
|
4.000
|
1.000
|
Hsc_gene_4382.t1
|
Hsc_gene_4382.t1
|
— |
C1A3Y1.1 Polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca T-27]
|
KAF7635192.1 S1 motif domain-containing protein [Meloidogyne graminicola]
|
HRD39042
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0004654|GO:0006402
|
GO:0005575_0.906|GO:0110165_0.895|GO:0005622_0.794|GO:0005737_0.781|GO:0008150_0.733|GO:0016020_0.719|GO:0009987_0.576|GO:0003674_0.541|GO:0043226_0.512|GO:0043229_0.503
|
IPR012162+1-111+|IPR027408+1-113+|IPR036345+11-111+
|
— | — | — |
PTHR11252+1-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-114
|
3u1k_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
12225.240
|
4.750
|
-3.000
|
22.807
|
7.018
|
37.719
|
62.281
|
10.526
|
12.281
|
51.754
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.777
|
0.149
|
0.000
|
0.123
|
0.178
|
0.000
|
4.055
|
1.655
|
0.000
|
1.090
|
0.623
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
5.877
|
4.488
|
— | — | — | — | — | — |
No JSON data available for plots.