Hg_chrom3_TN10mRNA_6534
Organism: Heterodera glycines Gene Locus: chr3:11310391-11313974 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.925 | 1.401 | 1.051 | 0.748 | 1.245 | 0.556 | 0.66 | 0.964 | 1.606 | 1.172 | 1.351 | 1.417 | 1.941 | 0.602 | 0.885 | 1.136 | 0.395 | 0.657 | 1.668 | 0.709 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6195
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.680
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.722
|
0.144
|
0.007
|
0.511
|
0.148
|
0.134
|
0.085
|
0.014
|
0.147
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000084
|
11.000
|
5.000
|
Hsc_gene_16057.t1;Hsc_gene_17318.t1;Hsc_gene_17318.t2;Hsc_gene_18191.t1;Hsc_gene_26575.t1
|
— | — |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3417397.1 BTB (POZ) domain containing 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.774|GO:0110165_0.774|GO:0008150_0.736|GO:0005622_0.716|GO:0043226_0.672|GO:0009987_0.668|GO:0043229_0.658|GO:0003674_0.625|GO:0005737_0.625|GO:0016020_0.610|GO:0043227_0.547|GO:0043231_0.543
|
IPR000210+19-123_28-107_28-138+|IPR002083+265-397_270-378_270-397+|IPR008974+259-408+|IPR011333+3-132_4-127+
|
SM00061+270-378+|SM00225+28-138+
|
PF00651+19-123+BTB/POZ_domain|PF22486+270-397+MATH_domain
|
— |
PTHR45774+13-117+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
47313.260
|
7.344
|
4.000
|
28.434
|
13.494
|
46.988
|
53.012
|
15.181
|
13.253
|
45.301
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
28.789
|
56.061
|
62.393
|
26.117
|
48.338
|
30.258
|
66.934
|
19.852
|
7.564
|
4.048
|
5.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.240
|
-1.145
|
0.859
|
-0.663
|
1.157
|
-0.711
|
1.897
|
— | — | — | — | — |
No JSON data available for plots.