Hg_chrom3_TN10mRNA_6535
Organism: Heterodera glycines Gene Locus: chr3:11324700-11327997 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 0.924 | 0.853 | 0.498 | 1.865 | 1.481 | 0.473 | 0.361 | 1.284 | 1.268 | 1.914 | 2.336 | 0.602 | 0.486 | 0.958 | 0.98 | 0.947 | 0.547 | 0.555 | 0.425 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKAIDAKIAAELARRKMI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.401
|
0.086
|
0.004
|
0.695
|
0.163
|
0.160
|
0.111
|
0.014
|
0.119
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001989
|
3.000
|
1.000
|
Hsc_gene_16063.t1
|
— | — |
P62975.1 Ubiquitin [Oryctolagus cuniculus]
|
XP_042237109.1 ubiquitin-60S ribosomal protein L40 isoform X1 [Homarus americanus]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.908|GO:0110165_0.903|GO:0005622_0.894|GO:0043226_0.833|GO:0043229_0.822|GO:0016020_0.767|GO:0005737_0.742|GO:0043227_0.723|GO:0043231_0.688|GO:0005829_0.545|GO:0008150_0.526|GO:0005634_0.521
|
IPR000626+222-277_224-270+|IPR019956+233-253_254-274+|IPR029071+216-273+|IPR050158+222-270+
|
— |
PF00240+224-270+Ubiquitin_family
|
— |
PTHR10666+222-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83
|
1.000
|
84-277
|
8du4_O
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
31406.120
|
8.757
|
5.000
|
33.935
|
5.054
|
56.318
|
43.682
|
18.051
|
15.884
|
41.516
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
98.735
|
6.721
|
13.163
|
17.516
|
28.134
|
15.363
|
63.647
|
8.495
|
34.754
|
348.509
|
214.042
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.249
|
— |
0.649
|
— |
2.062
|
— |
3.043
|
— | — | — | — | — |
No JSON data available for plots.