Hg_chrom3_TN10mRNA_6536
Organism: Heterodera glycines Gene Locus: chr3:11336410-11338489 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.361 | 1.361 | 1.064 | 0.734 | 0.709 | 0.273 | 0.697 | 2.394 | 1.537 | 0.934 | 0.806 | 2.503 | 1.478 | 1.023 | 1.086 | 0.456 | 1.308 | 0.564 | 0.409 | 1.095 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6197
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKGFNPVLFDKEMRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.362
|
0.167
|
0.581
|
0.102
|
0.034
|
0.047
|
0.021
|
0.075
|
0.295
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000560
|
7.000
|
0.000
|
0.000
|
— | — |
Q9BVA6.2 Protein adenylyltransferase FICD [Homo sapiens]
|
NXE41081.1 FICD transferase [Ptilorrhoa leucosticta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.926|GO:0003674_0.881|GO:0005575_0.847|GO:0110165_0.834|GO:0003824_0.825|GO:0050896_0.761|GO:0016020_0.730|GO:0006950_0.717|GO:0016740_0.717|GO:0016772_0.662|GO:0016779_0.654|GO:0071944_0.654|GO:0070566_0.650|GO:0070733_0.650|GO:0005886_0.632|GO:0009987_0.620|GO:0008152_0.602|GO:0005622_0.586|GO:0005737_0.576|GO:0044238_0.566|GO:0005488_0.538|GO:0043226_0.535|GO:0043229_0.529|GO:0043170_0.515|GO:0043227_0.513|GO:0051716_0.507|GO:0043231_0.506
|
IPR003812+42-179_44-137+|IPR036597+17-187_25-166+|IPR040198+27-166+
|
— |
PF02661+44-137+Fic/DOC_family
|
— |
PTHR13504+27-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
3cuc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
21006.100
|
7.820
|
5.500
|
25.532
|
14.362
|
43.617
|
56.383
|
15.426
|
10.106
|
51.596
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
brown
|
49.290
|
18.903
|
74.721
|
53.992
|
71.298
|
92.520
|
65.313
|
96.831
|
49.988
|
0.560
|
21.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.754
|
1.377
|
-0.361
|
0.371
|
0.390
|
-0.494
|
— |
-0.428
|
— | — |
5.188
|
— | — |
No JSON data available for plots.