Hg_chrom3_TN10mRNA_6537
Organism: Heterodera glycines Gene Locus: chr3:11338980-11342102 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.351 | 0.996 | 1.334 | 0.422 | 1.58 | 1.882 | 0.728 | 1.529 | 0.272 | 0.785 | 1.251 | 1.439 | 0.68 | 0.588 | 1.373 | 1.048 | 0.602 | 0.51 | 2.117 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6198
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKKAK,RKTTLDHRKQWEQKKREE,RKQWEQKKREEQQKAKQR,KRKKCHKKAKQRQEQKWP,RKKCHKKAKQRQEQKWPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.843
|
0.093
|
0.005
|
0.254
|
0.022
|
0.048
|
0.040
|
0.006
|
0.083
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003698
|
2.000
|
1.000
|
Hsc_gene_11884.t1
|
Hsc_gene_11884.t1
|
— | — | — |
KAI5656887
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;61-291
|
2.000
|
3-60;292-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
37153.850
|
6.353
|
-1.000
|
34.862
|
10.703
|
57.492
|
42.508
|
18.043
|
16.820
|
48.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1776.047
|
993.830
|
1123.168
|
2313.664
|
2335.072
|
1442.794
|
1015.754
|
733.240
|
2429.686
|
2213.872
|
2306.364
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.082
|
1.151
|
— |
-0.679
|
-0.496
|
-1.078
|
0.611
|
— | — | — | — | — |
No JSON data available for plots.