Hg_chrom3_TN10mRNA_6544
Organism: Heterodera glycines Gene Locus: chr3:11391712-11392803 Feature type: polypeptideProtein Sequence
Length: 145
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.321 | 1.123 | 0.502 | 0.713 | 0.345 | 0.707 | 0.328 | 0.345 | 1.379 | 2.05 | 0.627 | 2.434 | 2.49 | 0.663 | 0.844 | 1.576 | 1.244 | 1.149 | 1.061 | 1.623 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6205
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
36-56
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.299
|
0.226
|
0.015
|
0.140
|
0.790
|
0.364
|
0.552
|
0.013
|
0.132
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001231
|
3.000
|
2.000
|
Hsc_gene_16970.t1;Hsc_gene_3151.t1
|
— | — |
Q9S784.1 HVA22-like protein c [Arabidopsis thaliana]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.783|GO:0005575_0.764|GO:0110165_0.762|GO:0016020_0.697|GO:0005886_0.641|GO:0071944_0.641|GO:0005622_0.620|GO:0005737_0.614|GO:0043226_0.603|GO:0043227_0.599|GO:0043229_0.596|GO:0043231_0.593|GO:0005773_0.587|GO:0012505_0.558|GO:0009987_0.544
|
IPR004345+72-131+
|
— |
PF03134+72-131+TB2/DP1,_HVA22_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-145
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
16809.890
|
9.341
|
5.500
|
13.793
|
16.552
|
40.000
|
60.000
|
8.966
|
4.828
|
44.828
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
69.605
|
1.088
|
4.166
|
14.416
|
36.312
|
48.374
|
17.223
|
66.994
|
1.382
|
232.773
|
133.605
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.605
|
1.890
|
1.304
|
0.426
|
-1.480
|
— |
-1.815
|
-7.601
|
— | — | — | — |
No JSON data available for plots.